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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10403 and 10404 are separated by 119 nucleotides
10404 and 10405 are separated by 771 nucleotides
10405 and 10406 are separated by 12 nucleotides
10406 and 10407 are separated by 236 nucleotides
mRNA_2035: 10403 - K14824 ERB1, BOP1 ribosome biogenesis protein ERB1, at 801,171 to 804,014
10403
mRNA_2036: 10404 - HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199, at 804,134 to 805,617
10404
mRNA_2037: 10405 - Hypothetical Protein, at 806,389 to 807,325
10405
mRNA_2038: 10406 - Hypothetical Protein, at 807,338 to 808,315
10406
mRNA_2039: 10407 - KOG2895 Uncharacterized conserved protein, at 808,552 to 810,897
10407
Group
Condition
mRNA
_2035
mRNA
_2036
mRNA
_2037
mRNA
_2038
mRNA
_2039
10403
10404
10405
10406
10407
ypd buoyancy
40 hrs High Buoyancy
N.D.
-1.4
-0.1
-0.3
+0.0
auxotrophy
Dropout Complete
N.D.
-1.3
-0.3
-0.4
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
-0.6
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.6
-0.4
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.7
-0.3
-0.0
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.3
-0.3
-0.6
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
-0.3
-0.7
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.0
-0.8
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.4
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
-0.1
-0.2
-0.1
growth on ypd
YPD
N.D.
-0.0
-0.4
-0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.0
+0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.6
+0.3
-0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.3
+0.2
-0.8
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
+0.0
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.4
-0.3
+0.1
auxotrophy
YNB Glucose
N.D.
+0.0
-0.1
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.8
+0.0
-0.7
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.1
+0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
+0.3
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.7
-0.2
+0.1
+0.1
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