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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10406 and 10407 are separated by 236 nucleotides
10407 and 10408 are separated by 333 nucleotides
10408 and 10409 are separated by 1527 nucleotides
10409 and 10410 are separated by 3120 nucleotides
mRNA_2038: 10406 - Hypothetical Protein, at 807,338 to 808,315
10406
mRNA_2039: 10407 - KOG2895 Uncharacterized conserved protein, at 808,552 to 810,897
10407
mRNA_2040: 10408 - K11729 ACAD10 acyl-CoA dehydrogenase family member 10, at 811,231 to 813,728
10408
mRNA_2041: 10409 - HMMPfam-SAM domain (Sterile alpha motif)-PF00536,ProSiteProfiles-SAM domain profile.-PS50105,SUPERFAMILY--SSF47769, at 815,256 to 815,459
10409
mRNA_2042: 10410 - K11228 STE11 mitogen-activated protein kinase kinase kinase, at 818,580 to 819,652
10410
Group
Condition
mRNA
_2038
mRNA
_2039
mRNA
_2040
mRNA
_2041
mRNA
_2042
10406
10407
10408
10409
10410
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.4
-2.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.2
-2.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.7
+0.1
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.5
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.6
+0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.5
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
-0.3
N.D.
N.D.
growth on ypd
YPD
-0.3
-0.0
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.7
+0.3
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
-0.4
+0.4
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.8
+0.7
N.D.
N.D.
auxotrophy
YNB Glucose
+0.0
+0.3
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.0
N.D.
N.D.
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