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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10412 and 10413 are separated by 228 nucleotides
10413 and 10414 are separated by 413 nucleotides
10414 and 10415 are separated by 418 nucleotides
10415 and 10416 are separated by 348 nucleotides
mRNA_2044: 10412 - HMMPfam-Domain of unknown function (DUF1793)-PF08760,SUPERFAMILY--SSF48208, at 821,249 to 824,656
10412
mRNA_2045: 10413 - Hypothetical Protein, at 824,885 to 825,949
10413
mRNA_2046: 10414 - Hypothetical Protein, at 826,363 to 829,699
10414
mRNA_2047: 10415 - HMMPfam-Spo12 family-PF05032, at 830,118 to 830,933
10415
mRNA_2048: 10416 - Hypothetical Protein, at 831,282 to 832,133
10416
Group
Condition
mRNA
_2044
mRNA
_2045
mRNA
_2046
mRNA
_2047
mRNA
_2048
10412
10413
10414
10415
10416
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.9
-0.2
N.D.
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.6
-0.2
N.D.
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.3
+0.0
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.3
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.0
-0.0
-0.0
N.D.
+0.1
auxotrophy
Dropout Complete
+0.2
-0.3
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.3
-0.1
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
+0.0
N.D.
+0.2
growth on ypd
YPD
+0.1
+0.5
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose
+0.0
+0.1
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.0
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.5
+0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.3
+0.0
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.2
+0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.4
+0.1
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.3
+0.2
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.2
+0.2
N.D.
+1.1
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