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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10414 and 10415 are separated by 418 nucleotides
10415 and 10416 are separated by 348 nucleotides
10416 and 10417 are separated by 710 nucleotides
10417 and 10418 are separated by 698 nucleotides
mRNA_2046: 10414 - Hypothetical Protein, at 826,363 to 829,699
10414
mRNA_2047: 10415 - HMMPfam-Spo12 family-PF05032, at 830,118 to 830,933
10415
mRNA_2048: 10416 - Hypothetical Protein, at 831,282 to 832,133
10416
mRNA_2049: 10417 - K07565 NIP7 60S ribosome subunit biogenesis protein NIP7, at 832,844 to 834,374
10417
mRNA_2050: 10418 - K02725 PSMA1 20S proteasome subunit alpha 6, at 835,073 to 836,370
10418
Group
Condition
mRNA
_2046
mRNA
_2047
mRNA
_2048
mRNA
_2049
mRNA
_2050
10414
10415
10416
10417
10418
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-1.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-0.9
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-0.4
N.D.
N.D.
growth on ypd
YPD
-0.1
N.D.
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
N.D.
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
N.D.
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+1.1
N.D.
N.D.
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