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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10418 and 10419 are separated by 328 nucleotides
10419 and 10420 are separated by 913 nucleotides
10420 and 10421 are separated by 269 nucleotides
10421 and 10422 are separated by 194 nucleotides
mRNA_2050: 10418 - K02725 PSMA1 20S proteasome subunit alpha 6, at 835,073 to 836,370
10418
mRNA_2051: 10419 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 836,699 to 837,795
10419
mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838,709 to 841,749
10420
mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842,019 to 844,467
10421
mRNA_2054: 10422 - KOG1994 Predicted RNA binding protein, contains G-patch and Zn-finger domains, at 844,662 to 846,096
10422
Group
Condition
mRNA
_2050
mRNA
_2051
mRNA
_2052
mRNA
_2053
mRNA
_2054
10418
10419
10420
10421
10422
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.4
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-0.1
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.0
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.2
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.1
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.0
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.5
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
+0.2
+0.0
-0.2
growth on ypd
YPD
N.D.
-0.3
+0.1
-0.1
+0.5
auxotrophy
Dropout Complete
N.D.
-0.3
+0.2
+0.1
+0.3
auxotrophy
YNB Glucose
N.D.
-0.3
+0.0
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.2
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.4
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.8
-0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
-0.1
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
+0.2
+0.2
+0.5
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