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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10420 and 10421 are separated by 269 nucleotides
10421 and 10422 are separated by 194 nucleotides
10422 and 10423 are separated by 146 nucleotides
10423 and 10424 are separated by 47 nucleotides
mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838,709 to 841,749
10420
mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842,019 to 844,467
10421
mRNA_2054: 10422 - KOG1994 Predicted RNA binding protein, contains G-patch and Zn-finger domains, at 844,662 to 846,096
10422
mRNA_2055: 10423 - KOG2817 Predicted E3 ubiquitin ligase, at 846,243 to 848,116
10423
mRNA_2056: 10424 - K11667 INO80C, IES6 INO80 complex subunit C, at 848,164 to 849,134
10424
Group
Condition
mRNA
_2052
mRNA
_2053
mRNA
_2054
mRNA
_2055
mRNA
_2056
10420
10421
10422
10423
10424
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
-0.3
-2.4
-2.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
-0.1
-0.5
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.3
-2.0
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
-0.2
-0.9
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.0
-0.2
-0.9
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.1
-0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.4
-0.1
-0.5
+0.9
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.1
-0.1
+0.4
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.2
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
-0.3
+0.0
+1.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
+0.3
+0.2
-0.3
auxotrophy
Dropout Complete
+0.2
+0.1
+0.3
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
+0.4
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
+0.5
+0.4
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
+0.5
+0.3
-0.4
growth on ypd
YPD
+0.1
-0.1
+0.5
+0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.0
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
+0.2
+0.5
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
-0.3
-0.1
+2.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.1
+0.4
+0.8
auxotrophy
YNB Glucose
+0.0
+0.2
+0.4
+0.5
+0.4
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