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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10423 and 10424 are separated by 47 nucleotides
10424 and 10425 are separated by 379 nucleotides
10425 and 10426 are separated by 82 nucleotides
10426 and 10427 are separated by 238 nucleotides
mRNA_2055: 10423 - KOG2817 Predicted E3 ubiquitin ligase, at 846,243 to 848,116
10423
mRNA_2056: 10424 - K11667 INO80C, IES6 INO80 complex subunit C, at 848,164 to 849,134
10424
mRNA_2057: 10425 - KOG3010 Methyltransferase, at 849,514 to 850,707
10425
mRNA_2058: 10426 - KOG1128 Uncharacterized conserved protein, contains TPR repeats, at 850,790 to 853,642
10426
mRNA_2059: 10427 - K13509 AGPAT1_2 lysophosphatidate acyltransferase, at 853,881 to 854,956
10427
Group
Condition
mRNA
_2055
mRNA
_2056
mRNA
_2057
mRNA
_2058
mRNA
_2059
10423
10424
10425
10426
10427
facs on lipid accumulation
Sorted High BODIPY Gate
-2.4
-2.4
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-1.3
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.7
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
+0.5
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.9
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.4
-0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.6
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.1
+0.4
N.D.
N.D.
auxotrophy
Dropout Complete
+0.0
-0.0
-0.0
N.D.
N.D.
growth on ypd
YPD
+0.5
-0.1
-0.4
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.9
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.5
+0.4
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.3
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.4
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.6
+0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+1.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.8
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.8
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+2.0
+0.5
N.D.
N.D.
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