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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10427 and 10428 are separated by 933 nucleotides
10428 and 10429 are separated by 346 nucleotides
10429 and 10430 are separated by 763 nucleotides
10430 and 10431 are separated by 399 nucleotides
mRNA_2059: 10427 - K13509 AGPAT1_2 lysophosphatidate acyltransferase, at 853,881 to 854,956
10427
mRNA_2060: 10428 - K05824 LYS12 homoisocitrate dehydrogenase, at 855,890 to 857,453
10428
mRNA_2061: 10429 - HMMPfam-Protein of unknown function (DUF1640)-PF07798, at 857,800 to 859,276
10429
mRNA_2062: 10430 - K06210 NMNAT nicotinamide mononucleotide adenylyltransferase, at 860,040 to 861,424
10430
mRNA_2063: 10431 - SUPERFAMILY--SSF140860, at 861,824 to 863,143
10431
Group
Condition
mRNA
_2059
mRNA
_2060
mRNA
_2061
mRNA
_2062
mRNA
_2063
10427
10428
10429
10430
10431
growth on ricinoleic acid
YNB Glucose
N.D.
-2.8
-0.3
N.D.
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.8
-0.7
N.D.
-0.8
auxotrophy
YNB Glucose
N.D.
-2.5
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-2.4
+0.7
N.D.
-0.4
growth on oleic acid
YNB Glucose
N.D.
-2.3
+0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-2.1
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.8
-1.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-2.1
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-2.2
+0.7
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.3
-0.8
N.D.
+1.0
growth on oleic acid
YNB Oleic Acid
N.D.
-1.5
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.7
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.5
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-1.3
+0.4
N.D.
+0.4
auxotrophy
Dropout Complete
N.D.
-0.3
-0.1
N.D.
-0.1
growth on ypd
YPD
N.D.
-0.2
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.9
N.D.
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.8
-0.6
N.D.
+1.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.5
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.7
-0.2
N.D.
+0.3
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