Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 10428 and 10429 are separated by 346 nucleotides10429 and 10430 are separated by 763 nucleotides10430 and 10431 are separated by 399 nucleotides10431 and 10432 are separated by 575 nucleotides mRNA_2060: 10428 - K05824 LYS12 homoisocitrate dehydrogenase, at 855,890 to 857,453 10428 mRNA_2061: 10429 - HMMPfam-Protein of unknown function (DUF1640)-PF07798, at 857,800 to 859,276 10429 mRNA_2062: 10430 - K06210 NMNAT nicotinamide mononucleotide adenylyltransferase, at 860,040 to 861,424 10430 mRNA_2063: 10431 - SUPERFAMILY--SSF140860, at 861,824 to 863,143 10431 mRNA_2064: 10432 - KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans, at 863,719 to 865,833 10432
Group Condition mRNA_2060 mRNA_2061 mRNA_2062 mRNA_2063 mRNA_2064
10428 10429 10430 10431 10432
growth on ricinoleic acid YNB Glucose -2.8 -0.3 N.D. -0.7 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -1.8 -0.7 N.D. -0.8 +0.2
auxotrophy YNB Glucose -2.5 -0.1 N.D. -0.1 -0.0
growth on oleic acid YNB Glucose -2.3 +0.2 N.D. +0.0 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -2.4 +0.7 N.D. -0.4 +0.1
auxotrophy YNB Glucose 75mM Methionine -2.1 +0.2 N.D. +0.2 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -2.1 +0.1 N.D. -0.2 +0.4
auxotrophy YNB Glucose 75mM Arginine -2.2 +0.7 N.D. +0.1 -0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.8 -1.1 N.D. +0.2 +0.3
facs on lipid accumulation Sorted No BODIPY Gate -1.3 -0.8 N.D. +1.0 +0.3
growth on oleic acid YNB Oleic Acid -1.5 +0.3 N.D. +0.3 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 +0.5 N.D. -1.0 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.7 +0.1 N.D. -0.1 +0.1
auxotrophy Dropout Complete -0.3 -0.1 N.D. -0.1 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -1.3 +0.4 N.D. +0.4 +0.2
growth on ypd YPD -0.2 -0.2 N.D. +0.1 +0.2
ypd buoyancy 40 hrs Low Buoyancy +0.0 +0.2 N.D. -0.2 -0.0
ypd buoyancy 40 hrs High Buoyancy -0.0 +0.9 N.D. -0.5 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.5 N.D. +0.1 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.8 -0.6 N.D. +1.8 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.7 -0.2 N.D. +0.3 +0.3
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