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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10428 and 10429 are separated by 346 nucleotides
10429 and 10430 are separated by 763 nucleotides
10430 and 10431 are separated by 399 nucleotides
10431 and 10432 are separated by 575 nucleotides
mRNA_2060: 10428 - K05824 LYS12 homoisocitrate dehydrogenase, at 855,890 to 857,453
10428
mRNA_2061: 10429 - HMMPfam-Protein of unknown function (DUF1640)-PF07798, at 857,800 to 859,276
10429
mRNA_2062: 10430 - K06210 NMNAT nicotinamide mononucleotide adenylyltransferase, at 860,040 to 861,424
10430
mRNA_2063: 10431 - SUPERFAMILY--SSF140860, at 861,824 to 863,143
10431
mRNA_2064: 10432 - KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans, at 863,719 to 865,833
10432
Group
Condition
mRNA
_2060
mRNA
_2061
mRNA
_2062
mRNA
_2063
mRNA
_2064
10428
10429
10430
10431
10432
growth on ricinoleic acid
YNB Glucose
-2.8
-0.3
N.D.
-0.7
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.8
-0.7
N.D.
-0.8
+0.2
auxotrophy
YNB Glucose
-2.5
-0.1
N.D.
-0.1
-0.0
growth on oleic acid
YNB Glucose
-2.3
+0.2
N.D.
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.4
+0.7
N.D.
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-2.1
+0.2
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.1
+0.1
N.D.
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-2.2
+0.7
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-1.1
N.D.
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
-0.8
N.D.
+1.0
+0.3
growth on oleic acid
YNB Oleic Acid
-1.5
+0.3
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.5
N.D.
-1.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.1
N.D.
-0.1
+0.1
auxotrophy
Dropout Complete
-0.3
-0.1
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
+0.4
N.D.
+0.4
+0.2
growth on ypd
YPD
-0.2
-0.2
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.9
N.D.
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.6
N.D.
+1.8
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.2
N.D.
+0.3
+0.3
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