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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10430 and 10431 are separated by 399 nucleotides
10431 and 10432 are separated by 575 nucleotides
10432 and 10433 are separated by 404 nucleotides
10433 and 10434 are separated by 196 nucleotides
mRNA_2062: 10430 - K06210 NMNAT nicotinamide mononucleotide adenylyltransferase, at 860,040 to 861,424
10430
mRNA_2063: 10431 - SUPERFAMILY--SSF140860, at 861,824 to 863,143
10431
mRNA_2064: 10432 - KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans, at 863,719 to 865,833
10432
mRNA_2065: 10433 - Hypothetical Protein, at 866,238 to 867,408
10433
mRNA_2066: 10434 - SUPERFAMILY--SSF52047, at 867,605 to 868,583
10434
Group
Condition
mRNA
_2062
mRNA
_2063
mRNA
_2064
mRNA
_2065
mRNA
_2066
10430
10431
10432
10433
10434
growth on ricinoleic acid
YNB Glucose
N.D.
-0.7
+0.1
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.5
-0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.1
+0.4
-0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.0
+0.2
-0.6
auxotrophy
YNB Glucose
N.D.
-0.1
-0.0
+0.2
-0.2
auxotrophy
Dropout Complete
N.D.
-0.1
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.1
+0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.8
+0.2
+0.6
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.1
+0.3
-0.5
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.0
+0.1
-0.0
growth on ypd
YPD
N.D.
+0.1
+0.2
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.0
+0.0
+0.5
+0.7
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.0
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.0
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.0
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.4
+0.8
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.3
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
+0.2
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.3
+0.5
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+1.8
+0.1
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+1.0
+0.3
+0.4
+0.4
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