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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10431 and 10432 are separated by 575 nucleotides
10432 and 10433 are separated by 404 nucleotides
10433 and 10434 are separated by 196 nucleotides
10434 and 10435 are separated by 379 nucleotides
mRNA_2063: 10431 - SUPERFAMILY--SSF140860, at 861,824 to 863,143
10431
mRNA_2064: 10432 - KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans, at 863,719 to 865,833
10432
mRNA_2065: 10433 - Hypothetical Protein, at 866,238 to 867,408
10433
mRNA_2066: 10434 - SUPERFAMILY--SSF52047, at 867,605 to 868,583
10434
mRNA_2067: 10435 - BLAST cell morphogenesis protein [Grosmannia clavigera ..., at 868,963 to 869,751
10435
Group
Condition
mRNA
_2063
mRNA
_2064
mRNA
_2065
mRNA
_2066
mRNA
_2067
10431
10432
10433
10434
10435
growth on ricinoleic acid
YNB Glucose
-0.7
+0.1
+0.4
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.1
-0.1
+0.3
-0.1
auxotrophy
YNB Glucose
-0.1
-0.0
+0.2
-0.2
-0.3
auxotrophy
Dropout Complete
-0.1
-0.1
+0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.4
-0.7
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
+0.2
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
+0.4
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
+0.3
-0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+0.2
+0.6
+0.0
-0.1
growth on oleic acid
YNB Glucose
+0.0
-0.0
+0.1
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.2
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.1
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
-0.2
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.0
+0.5
+0.7
+0.3
growth on ypd
YPD
+0.1
+0.2
-0.2
+0.0
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.3
+0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.5
+0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.4
+0.8
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
+0.5
-0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.8
+0.1
+0.1
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+1.0
+0.3
+0.4
+0.4
-0.2
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