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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10432 and 10433 are separated by 404 nucleotides
10433 and 10434 are separated by 196 nucleotides
10434 and 10435 are separated by 379 nucleotides
10435 and 10436 are separated by 171 nucleotides
mRNA_2064: 10432 - KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans, at 863,719 to 865,833
10432
mRNA_2065: 10433 - Hypothetical Protein, at 866,238 to 867,408
10433
mRNA_2066: 10434 - SUPERFAMILY--SSF52047, at 867,605 to 868,583
10434
mRNA_2067: 10435 - BLAST cell morphogenesis protein [Grosmannia clavigera ..., at 868,963 to 869,751
10435
mRNA_2068: 10436 - Hypothetical Protein, at 869,923 to 870,194
10436
Group
Condition
mRNA
_2064
mRNA
_2065
mRNA
_2066
mRNA
_2067
mRNA
_2068
10432
10433
10434
10435
10436
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
-0.5
-0.2
-0.1
auxotrophy
YNB Glucose
-0.0
+0.2
-0.2
-0.3
+0.1
auxotrophy
Dropout Complete
-0.1
+0.1
-0.1
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.6
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
-0.7
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.3
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
-0.2
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
-0.3
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.3
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
+0.2
+0.1
+0.0
growth on oleic acid
YNB Glucose
-0.0
+0.1
-0.0
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.3
+0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
-0.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.5
+0.0
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
-0.2
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
+0.3
-0.0
+0.1
growth on ypd
YPD
+0.2
-0.2
+0.0
+0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.6
+0.0
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.4
+0.4
-0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.5
+0.7
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.8
-0.5
+0.3
+0.5
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