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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10437 and 10438 are separated by 260 nucleotides
10438 and 10439 are separated by 590 nucleotides
10439 and 10440 are separated by 2178 nucleotides
10440 and 10441 are separated by 265 nucleotides
mRNA_2069: 10437 - K03039 PSMD13, RPN9 26S proteasome regulatory subunit N9, at 1,235 to 2,339
10437
mRNA_2070: 10438 - Hypothetical Protein, at 2,600 to 2,887
10438
mRNA_2071: 10439 - HMMPfam-Chromate transporter-PF02417, at 3,478 to 5,448
10439
mRNA_2072: 10440 - KOG2908 26S proteasome regulatory complex, subunit RPN9/PSMD13, at 7,627 to 8,732
10440
mRNA_2073: 10441 - Hypothetical Protein, at 8,998 to 9,576
10441
Group
Condition
mRNA
_2069
mRNA
_2070
mRNA
_2071
mRNA
_2072
mRNA
_2073
10437
10438
10439
10440
10441
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
N.D.
-1.0
-0.4
growth on ypd
YPD
N.D.
-0.4
N.D.
-1.1
+0.2
auxotrophy
Dropout Complete
N.D.
-0.1
N.D.
-1.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.9
N.D.
-0.4
+0.4
auxotrophy
YNB Glucose
N.D.
-0.4
N.D.
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
N.D.
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
N.D.
-0.6
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
N.D.
-0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
N.D.
-0.5
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
N.D.
-0.4
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
N.D.
-0.6
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
N.D.
+1.0
-1.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.8
N.D.
-0.7
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
N.D.
+0.7
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.6
N.D.
-0.7
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.7
N.D.
-0.8
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.5
N.D.
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.8
N.D.
-0.5
+0.4
growth on oleic acid
YNB Glucose
N.D.
+0.2
N.D.
+0.5
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.7
N.D.
+0.1
+1.0
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