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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10439 and 10440 are separated by 2178 nucleotides
10440 and 10441 are separated by 265 nucleotides
10441 and 10442 are separated by 302 nucleotides
10442 and 10443 are separated by 1376 nucleotides
mRNA_2071: 10439 - HMMPfam-Chromate transporter-PF02417, at 3,478 to 5,448
10439
mRNA_2072: 10440 - KOG2908 26S proteasome regulatory complex, subunit RPN9/PSMD13, at 7,627 to 8,732
10440
mRNA_2073: 10441 - Hypothetical Protein, at 8,998 to 9,576
10441
mRNA_2074: 10442 - HMMPfam-Chromate transporter-PF02417, at 9,879 to 11,848
10442
mRNA_2075: 10443 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 13,225 to 14,495
10443
Group
Condition
mRNA
_2071
mRNA
_2072
mRNA
_2073
mRNA
_2074
mRNA
_2075
10439
10440
10441
10442
10443
auxotrophy
Dropout Complete
N.D.
-1.2
+0.1
+0.1
+0.2
growth on ypd
YPD
N.D.
-1.1
+0.2
-0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.0
-0.4
+1.0
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.6
+0.4
+0.0
-0.1
auxotrophy
YNB Glucose
N.D.
-0.5
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.7
+0.4
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.8
+0.7
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
+0.3
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.0
+0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.7
+0.6
+0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.7
-0.3
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.6
+0.5
+0.6
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
+0.4
+0.6
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
+0.1
+0.9
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.4
+0.8
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+1.0
-1.2
+0.7
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.0
+0.8
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
-0.3
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+1.0
+0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.5
+0.5
+0.7
+0.3
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