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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10442 and 10443 are separated by 1376 nucleotides
10443 and 10444 are separated by 491 nucleotides
10444 and 10445 are separated by 360 nucleotides
10445 and 10446 are separated by 237 nucleotides
mRNA_2074: 10442 - HMMPfam-Chromate transporter-PF02417, at 9,879 to 11,848
10442
mRNA_2075: 10443 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 13,225 to 14,495
10443
mRNA_2076: 10444 - K15073 UFO1 ubiquitin ligase complex F-box protein UFO1, at 14,987 to 18,739
10444
mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19,100 to 20,228
10445
mRNA_2078: 10446 - K10773 NTH endonuclease III, at 20,466 to 22,211
10446
Group
Condition
mRNA
_2074
mRNA
_2075
mRNA
_2076
mRNA
_2077
mRNA
_2078
10442
10443
10444
10445
10446
auxotrophy
YNB Glucose
+0.1
+0.0
-0.2
-0.0
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.2
+0.0
-0.2
growth on ypd
YPD
-0.0
+0.3
+0.0
+0.0
-0.4
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
+0.0
+0.3
-0.4
auxotrophy
Dropout Complete
+0.1
+0.2
-0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.4
+0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
-0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
+0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
+0.3
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.1
+0.0
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
-0.2
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.0
+0.2
+0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.2
+0.3
+0.1
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
+0.1
+0.0
-0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.8
-0.1
-0.1
+0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.1
+0.0
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.2
-0.0
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
-0.0
+0.4
+0.3
-0.0
growth on oleic acid
YNB Glucose
+0.7
+0.3
+0.2
+0.3
-0.1
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