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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10445 and 10446 are separated by 237 nucleotides
10446 and 10447 are separated by 367 nucleotides
10447 and 10448 are separated by 1266 nucleotides
10448 and 10449 overlap by 7 nucleotides
mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19,100 to 20,228
10445
mRNA_2078: 10446 - K10773 NTH endonuclease III, at 20,466 to 22,211
10446
mRNA_2079: 10447 - Hypothetical Protein, at 22,579 to 23,856
10447
mRNA_2080: 10448 - Hypothetical Protein, at 25,123 to 25,584
10448
mRNA_2081: 10449 - BLAST 163.m06341p [Cryptococcus neoformans], at 25,578 to 27,560
10449
Group
Condition
mRNA
_2077
mRNA
_2078
mRNA
_2079
mRNA
_2080
mRNA
_2081
10445
10446
10447
10448
10449
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.8
+0.4
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.3
-0.4
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.3
+0.3
-0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
+0.3
+0.2
-0.8
growth on oleic acid
YNB Oleic Acid
+0.3
-0.4
-0.3
+0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
+0.3
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.1
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.0
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.3
-0.1
+0.1
auxotrophy
Dropout Complete
+0.0
-0.1
-0.5
+0.3
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
+0.3
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
-0.6
+0.3
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
+0.2
+0.4
+0.2
auxotrophy
YNB Glucose
-0.0
-0.5
-0.1
+0.2
+0.9
growth on ypd
YPD
+0.0
-0.4
+0.4
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
+0.4
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
+0.5
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
+0.6
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.0
+0.1
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.0
-0.1
+0.3
+0.8
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.6
+0.1
+0.5
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