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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10447 and 10448 are separated by 1266 nucleotides
10448 and 10449 overlap by 7 nucleotides
10449 and 10450 are separated by 333 nucleotides
10450 and 10451 are separated by 1023 nucleotides
mRNA_2079: 10447 - Hypothetical Protein, at 22,579 to 23,856
10447
mRNA_2080: 10448 - Hypothetical Protein, at 25,123 to 25,584
10448
mRNA_2081: 10449 - BLAST 163.m06341p [Cryptococcus neoformans], at 25,578 to 27,560
10449
mRNA_2082: 10450 - Hypothetical Protein, at 27,894 to 29,242
10450
mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30,266 to 34,170
10451
Group
Condition
mRNA
_2079
mRNA
_2080
mRNA
_2081
mRNA
_2082
mRNA
_2083
10447
10448
10449
10450
10451
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
+0.2
+0.6
-2.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
-0.3
-0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
-0.2
+0.6
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
+0.1
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.3
+0.9
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
-0.0
+0.5
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
+0.8
-0.7
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.1
+0.2
+0.1
auxotrophy
Dropout Complete
-0.5
+0.3
+0.8
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
-0.8
+0.0
+1.0
auxotrophy
YNB Glucose
-0.1
+0.2
+0.9
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
+0.1
+0.5
-0.5
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.1
-0.1
+0.1
+0.1
growth on ypd
YPD
+0.4
+0.4
+0.1
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
+0.3
+0.9
-0.7
growth on ricinoleic acid
YNB Glucose
+0.6
+0.1
+0.5
-0.8
+0.5
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.7
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
+0.2
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.1
+0.3
+0.4
+0.1
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