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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10449 and 10450 are separated by 333 nucleotides
10450 and 10451 are separated by 1023 nucleotides
10451 and 10452 are separated by 519 nucleotides
10452 and 10453 are separated by 1193 nucleotides
mRNA_2081: 10449 - BLAST 163.m06341p [Cryptococcus neoformans], at 25,578 to 27,560
10449
mRNA_2082: 10450 - Hypothetical Protein, at 27,894 to 29,242
10450
mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30,266 to 34,170
10451
mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34,690 to 37,198
10452
mRNA_2085: 10453 - BLAST nucleotide-diphospho-sugar transferase [Sanghuangporu..., at 38,392 to 39,762
10453
Group
Condition
mRNA
_2081
mRNA
_2082
mRNA
_2083
mRNA
_2084
mRNA
_2085
10449
10450
10451
10452
10453
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.6
-2.1
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.7
-0.1
+0.4
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.3
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.5
-0.8
+0.1
+0.2
growth on ypd
YPD
+0.1
-0.2
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+0.0
+1.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
-0.5
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.6
-0.5
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.1
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.5
-0.8
+0.5
-0.3
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.1
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
+0.5
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.8
-0.7
+0.0
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
+0.3
+0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.9
-0.7
+0.1
+0.2
growth on oleic acid
YNB Glucose
+0.7
+0.2
+0.2
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.9
-0.4
-0.0
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.4
+0.1
+0.1
+0.0
auxotrophy
YNB Glucose
+0.9
-0.5
+0.2
+0.1
+0.5
auxotrophy
Dropout Complete
+0.8
-0.2
+0.3
+0.1
+0.7
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