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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10453 and 10454 are separated by 457 nucleotides
10454 and 10455 are separated by 172 nucleotides
10455 and 10456 are separated by 694 nucleotides
10456 and 10457 are separated by 211 nucleotides
mRNA_2085: 10453 - BLAST nucleotide-diphospho-sugar transferase [Sanghuangporu..., at 38,392 to 39,762
10453
mRNA_2086: 10454 - Hypothetical Protein, at 40,220 to 41,311
10454
mRNA_2087: 10455 - K19792 FET4 low-affinity ferrous iron transport protein, at 41,484 to 43,178
10455
mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43,873 to 45,155
10456
mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45,367 to 47,923
10457
Group
Condition
mRNA
_2085
mRNA
_2086
mRNA
_2087
mRNA
_2088
mRNA
_2089
10453
10454
10455
10456
10457
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.1
-0.8
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
+0.1
-0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.3
-0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.4
+0.1
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.2
+0.1
-0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
-0.2
-0.6
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-0.2
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
-0.4
-0.2
-0.3
growth on ypd
YPD
+0.1
+0.1
-0.4
+0.2
-0.5
auxotrophy
Dropout Complete
+0.7
+0.1
-0.4
-0.4
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
+0.4
-0.8
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.0
+0.1
-0.4
+0.4
auxotrophy
YNB Glucose
+0.5
+0.1
+0.1
-0.3
-0.2
growth on ricinoleic acid
YNB Glucose
+0.4
+0.0
+0.3
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.0
+0.7
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.0
+0.1
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.1
+0.0
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
+0.2
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.6
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
+0.1
+0.2
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.0
-0.4
+0.2
+1.1
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