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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10455 and 10456 are separated by 694 nucleotides
10456 and 10457 are separated by 211 nucleotides
10457 and 10458 are separated by 328 nucleotides
10458 and 10459 are separated by 195 nucleotides
mRNA_2087: 10455 - K19792 FET4 low-affinity ferrous iron transport protein, at 41,484 to 43,178
10455
mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43,873 to 45,155
10456
mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45,367 to 47,923
10457
mRNA_2090: 10458 - K09104 K09104 bHLH factor, other, at 48,252 to 49,306
10458
mRNA_2091: 10459 - KOG0254 Predicted transporter (major facilitator superfamily), at 49,502 to 51,805
10459
Group
Condition
mRNA
_2087
mRNA
_2088
mRNA
_2089
mRNA
_2090
mRNA
_2091
10455
10456
10457
10458
10459
auxotrophy
Dropout Complete
-0.4
-0.4
-0.5
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
-0.3
-0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.6
+0.2
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.1
-0.2
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
-0.5
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.1
-0.1
-0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.8
-0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
+0.3
-0.6
+0.2
-0.3
-0.2
growth on ypd
YPD
-0.4
+0.2
-0.5
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.4
-0.3
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.2
-0.3
+0.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
+1.1
-1.0
-0.2
auxotrophy
YNB Glucose
+0.1
-0.3
-0.2
+0.2
-0.2
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.6
+0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.1
+0.3
-1.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.4
+0.4
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.3
+0.1
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.5
-0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.1
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
+0.7
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.0
-0.0
+0.9
-0.0
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