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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10456 and 10457 are separated by 211 nucleotides
10457 and 10458 are separated by 328 nucleotides
10458 and 10459 are separated by 195 nucleotides
10459 and 10460 are separated by 823 nucleotides
mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43,873 to 45,155
10456
mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45,367 to 47,923
10457
mRNA_2090: 10458 - K09104 K09104 bHLH factor, other, at 48,252 to 49,306
10458
mRNA_2091: 10459 - KOG0254 Predicted transporter (major facilitator superfamily), at 49,502 to 51,805
10459
mRNA_2092: 10460 - K20457 DHFS dihydrofolate synthase, at 52,629 to 54,149
10460
Group
Condition
mRNA
_2088
mRNA
_2089
mRNA
_2090
mRNA
_2091
mRNA
_2092
10456
10457
10458
10459
10460
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.1
+0.1
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.2
-0.3
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.6
+0.2
-0.3
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
-1.4
+0.1
N.D.
auxotrophy
Dropout Complete
-0.4
-0.5
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.5
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
-0.5
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
-0.3
+0.4
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.6
+0.5
-0.2
N.D.
auxotrophy
YNB Glucose
-0.3
-0.2
+0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.4
-0.2
-0.2
N.D.
growth on ypd
YPD
+0.2
-0.5
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
+0.5
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+1.1
-1.0
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.2
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.6
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.3
+0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.7
-0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.0
+0.9
-0.0
N.D.
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