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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10459 and 10460 are separated by 823 nucleotides
10460 and 10461 are separated by 354 nucleotides
10461 and 10462 are separated by 252 nucleotides
10462 and 10463 are separated by 286 nucleotides
mRNA_2091: 10459 - KOG0254 Predicted transporter (major facilitator superfamily), at 49,502 to 51,805
10459
mRNA_2092: 10460 - K20457 DHFS dihydrofolate synthase, at 52,629 to 54,149
10460
mRNA_2093: 10461 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 54,504 to 56,604
10461
mRNA_2094: 10462 - Hypothetical Protein, at 56,857 to 57,476
10462
mRNA_2095: 10463 - Hypothetical Protein, at 57,763 to 59,527
10463
Group
Condition
mRNA
_2091
mRNA
_2092
mRNA
_2093
mRNA
_2094
mRNA
_2095
10459
10460
10461
10462
10463
auxotrophy
YNB Glucose
-0.2
N.D.
-0.0
-0.7
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.2
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.1
-0.6
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.3
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.1
-0.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.1
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
-0.2
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.0
-0.1
-0.0
auxotrophy
Dropout Complete
-0.2
N.D.
-0.0
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
+0.0
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
-0.1
-0.6
+0.4
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.0
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
+0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
+0.2
+0.2
+0.0
growth on ypd
YPD
+0.1
N.D.
+0.3
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.1
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.3
+0.5
+0.1
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