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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10461 and 10462 are separated by 252 nucleotides
10462 and 10463 are separated by 286 nucleotides
10463 and 10464 are separated by 379 nucleotides
10464 and 10465 are separated by 651 nucleotides
mRNA_2093: 10461 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 54,504 to 56,604
10461
mRNA_2094: 10462 - Hypothetical Protein, at 56,857 to 57,476
10462
mRNA_2095: 10463 - Hypothetical Protein, at 57,763 to 59,527
10463
mRNA_2096: 10464 - K05754 ARPC5 actin related protein 2/3 complex, subunit 5, at 59,907 to 60,818
10464
mRNA_2097: 10465 - K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase, at 61,470 to 63,350
10465
Group
Condition
mRNA
_2093
mRNA
_2094
mRNA
_2095
mRNA
_2096
mRNA
_2097
10461
10462
10463
10464
10465
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.6
+0.4
N.D.
-2.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-0.1
N.D.
-1.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
-0.2
N.D.
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.3
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.6
-0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+0.0
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
+0.0
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
-0.1
N.D.
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.0
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.0
N.D.
+0.1
auxotrophy
YNB Glucose
-0.0
-0.7
-0.1
N.D.
+1.0
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
+0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
-0.1
N.D.
+1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
+0.3
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.0
N.D.
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.0
+0.1
N.D.
+1.1
auxotrophy
Dropout Complete
-0.0
+0.2
-0.0
N.D.
+1.1
growth on ypd
YPD
+0.3
-0.2
+0.1
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.5
+0.1
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
+0.1
N.D.
+1.9
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