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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10463 and 10464 are separated by 379 nucleotides
10464 and 10465 are separated by 651 nucleotides
10465 and 10466 are separated by 414 nucleotides
10466 and 10467 are separated by 429 nucleotides
mRNA_2095: 10463 - Hypothetical Protein, at 57,763 to 59,527
10463
mRNA_2096: 10464 - K05754 ARPC5 actin related protein 2/3 complex, subunit 5, at 59,907 to 60,818
10464
mRNA_2097: 10465 - K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase, at 61,470 to 63,350
10465
mRNA_2098: 10466 - Hypothetical Protein, at 63,765 to 64,899
10466
mRNA_2099: 10467 - HMMPfam-PWWP domain-PF00855,SUPERFAMILY--SSF63748, at 65,329 to 67,842
10467
Group
Condition
mRNA
_2095
mRNA
_2096
mRNA
_2097
mRNA
_2098
mRNA
_2099
10463
10464
10465
10466
10467
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
-2.8
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-1.2
+0.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.7
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
-0.6
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.2
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.1
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.1
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.4
+0.6
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.4
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.7
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.0
+0.8
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.3
+0.6
+0.2
growth on ypd
YPD
+0.1
N.D.
+1.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+1.2
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.9
-0.0
+0.2
auxotrophy
YNB Glucose
-0.1
N.D.
+1.0
+0.4
-0.1
auxotrophy
Dropout Complete
-0.0
N.D.
+1.1
+0.4
-0.3
growth on oleic acid
YNB Glucose
+0.0
N.D.
+0.7
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+1.9
+0.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+1.1
+0.4
+0.5
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