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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10466 and 10467 are separated by 429 nucleotides
10467 and 10468 are separated by 250 nucleotides
10468 and 10469 are separated by 179 nucleotides
10469 and 10470 are separated by 324 nucleotides
mRNA_2098: 10466 - Hypothetical Protein, at 63,765 to 64,899
10466
mRNA_2099: 10467 - HMMPfam-PWWP domain-PF00855,SUPERFAMILY--SSF63748, at 65,329 to 67,842
10467
mRNA_2100: 10468 - K13184 DHX9 ATP-dependent RNA helicase A, at 68,093 to 72,993
10468
mRNA_2101: 10469 - K12041 SLC9A6_7, NHE6_7 solute carrier family 9 (sodium/hydrogen exchanger), member 6/7, at 73,173 to 76,460
10469
mRNA_2102: 10470 - SUPERFAMILY--SSF53067, at 76,785 to 80,345
10470
Group
Condition
mRNA
_2098
mRNA
_2099
mRNA
_2100
mRNA
_2101
mRNA
_2102
10466
10467
10468
10469
10470
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.0
N.D.
-0.8
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.0
N.D.
-0.7
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.5
N.D.
-1.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
N.D.
-0.7
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.0
N.D.
-0.7
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
N.D.
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
N.D.
-0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
N.D.
+0.0
+0.0
growth on ypd
YPD
-0.2
+0.1
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.3
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.3
N.D.
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.4
N.D.
+0.3
+0.1
auxotrophy
Dropout Complete
+0.4
-0.3
N.D.
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.3
N.D.
+0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.5
N.D.
+1.0
-0.1
auxotrophy
YNB Glucose
+0.4
-0.1
N.D.
+0.6
+0.2
growth on oleic acid
YNB Glucose
+0.5
+0.2
N.D.
+0.7
+0.1
growth on ricinoleic acid
YNB Glucose
+0.6
-0.2
N.D.
+0.9
+0.2
growth on oleic acid
YNB Oleic Acid
+0.6
+0.2
N.D.
+0.8
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.4
N.D.
+1.4
-0.1
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