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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10471 and 10472 are separated by 52 nucleotides
10472 and 10473 are separated by 579 nucleotides
10473 and 10474 are separated by 326 nucleotides
10474 and 10475 are separated by 705 nucleotides
mRNA_2103: 10471 - Hypothetical Protein, at 80,514 to 81,311
10471
mRNA_2104: 10472 - KOG0101 Molecular chaperones HSP70/HSC70, HSP70 superfamily, at 81,364 to 84,462
10472
mRNA_2105: 10473 - K17991 PXG peroxygenase, at 85,042 to 86,447
10473
mRNA_2106: 10474 - K15710 SHPRH E3 ubiquitin-protein ligase SHPRH, at 86,774 to 93,150
10474
mRNA_2107: 10475 - K01918 panC pantoate--beta-alanine ligase, at 93,856 to 95,198
10475
Group
Condition
mRNA
_2103
mRNA
_2104
mRNA
_2105
mRNA
_2106
mRNA
_2107
10471
10472
10473
10474
10475
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.0
-0.4
+0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
-0.2
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
+0.1
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.0
-0.4
+0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
-0.1
-0.0
auxotrophy
Dropout Complete
+0.3
+0.1
-0.3
+0.1
-0.2
auxotrophy
YNB Glucose
+0.2
+0.1
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.0
+0.0
+0.0
growth on ypd
YPD
+0.3
+0.1
-0.3
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.1
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
-0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
+0.2
-0.0
+0.4
growth on oleic acid
YNB Glucose
-0.0
+0.2
+0.1
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
+0.3
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
+0.5
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.6
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.0
+0.6
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.3
+0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.5
+0.2
+0.4
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