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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10473 and 10474 are separated by 326 nucleotides
10474 and 10475 are separated by 705 nucleotides
10475 and 10476 are separated by 221 nucleotides
10476 and 10477 are separated by 1983 nucleotides
mRNA_2105: 10473 - K17991 PXG peroxygenase, at 85,042 to 86,447
10473
mRNA_2106: 10474 - K15710 SHPRH E3 ubiquitin-protein ligase SHPRH, at 86,774 to 93,150
10474
mRNA_2107: 10475 - K01918 panC pantoate--beta-alanine ligase, at 93,856 to 95,198
10475
mRNA_2108: 10476 - Hypothetical Protein, at 95,420 to 96,044
10476
mRNA_2109: 10477 - SUPERFAMILY--SSF56112, at 98,028 to 98,739
10477
Group
Condition
mRNA
_2105
mRNA
_2106
mRNA
_2107
mRNA
_2108
mRNA
_2109
10473
10474
10475
10476
10477
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.0
-0.3
-0.5
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.4
-0.7
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
-0.3
-0.5
+0.1
auxotrophy
Dropout Complete
-0.3
+0.1
-0.2
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.0
-0.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.1
-0.4
+0.1
auxotrophy
YNB Glucose
+0.1
+0.0
-0.2
-0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.0
-0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
+0.0
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.0
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
+0.4
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.2
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.1
+0.2
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.2
+0.3
-0.3
+0.1
growth on ypd
YPD
-0.3
+0.1
+0.1
+0.5
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.1
+0.3
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
+0.1
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.2
+0.4
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.1
+0.4
+0.1
+0.1
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