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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10477 and 10478 are separated by 335 nucleotides
10478 and 10479 are separated by 465 nucleotides
10479 and 10480 are separated by 121 nucleotides
10480 and 10481 are separated by 376 nucleotides
mRNA_2109: 10477 - SUPERFAMILY--SSF56112, at 98,028 to 98,739
10477
mRNA_2110: 10478 - K10277 KDM8, JMJD5 lysine-specific demethylase 8, at 99,075 to 100,834
10478
mRNA_2111: 10479 - K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1, at 101,300 to 102,530
10479
mRNA_2112: 10480 - Hypothetical Protein, at 102,652 to 103,100
10480
mRNA_2113: 10481 - KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors, at 103,477 to 104,004
10481
Group
Condition
mRNA
_2109
mRNA
_2110
mRNA
_2111
mRNA
_2112
mRNA
_2113
10477
10478
10479
10480
10481
auxotrophy
Dropout Complete
+0.0
-0.4
-2.1
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
-1.4
-0.0
-0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.8
-0.9
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
-2.0
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.6
-1.9
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
-0.9
-0.1
-0.1
auxotrophy
YNB Glucose
+0.0
-0.4
-0.3
+0.2
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
-0.6
-0.2
+0.3
growth on ypd
YPD
+0.2
+0.4
-1.5
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.5
+0.1
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.5
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
-0.2
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.8
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.3
+1.8
+0.2
-0.7
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
+0.6
-0.1
+1.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
+1.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
+1.0
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
+1.1
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
+1.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
+1.2
+0.5
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.4
+1.6
+0.4
+0.9
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