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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10478 and 10479 are separated by 465 nucleotides
10479 and 10480 are separated by 121 nucleotides
10480 and 10481 are separated by 376 nucleotides
10481 and 10482 are separated by 1973 nucleotides
mRNA_2110: 10478 - K10277 KDM8, JMJD5 lysine-specific demethylase 8, at 99,075 to 100,834
10478
mRNA_2111: 10479 - K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1, at 101,300 to 102,530
10479
mRNA_2112: 10480 - Hypothetical Protein, at 102,652 to 103,100
10480
mRNA_2113: 10481 - KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors, at 103,477 to 104,004
10481
mRNA_2114: 10482 - K10768 ALKBH6 alkylated DNA repair protein alkB homolog 6, at 105,978 to 107,393
10482
Group
Condition
mRNA
_2110
mRNA
_2111
mRNA
_2112
mRNA
_2113
mRNA
_2114
10478
10479
10480
10481
10482
auxotrophy
Dropout Complete
-0.4
-2.1
+0.1
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.3
-1.4
-0.0
-0.8
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.8
-0.9
+0.1
-0.5
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-2.0
+0.3
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.9
-0.1
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-1.9
-0.0
-0.1
+0.1
auxotrophy
YNB Glucose
-0.4
-0.3
+0.2
-0.8
-0.1
growth on ypd
YPD
+0.4
-1.5
+0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.6
-0.2
+0.3
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.5
+0.1
-1.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.1
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.8
-0.1
+0.7
+0.3
growth on ricinoleic acid
YNB Glucose
-0.4
+0.6
-0.1
+1.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+1.8
+0.2
-0.7
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+1.1
-0.2
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
+1.1
-0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+1.0
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+1.1
+0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+1.6
+0.4
+0.9
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+1.2
+0.5
+0.6
+0.2
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