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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10481 and 10482 are separated by 1973 nucleotides
10482 and 10483 are separated by 162 nucleotides
10483 and 10484 are separated by 762 nucleotides
10484 and 10485 are separated by 626 nucleotides
mRNA_2113: 10481 - KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors, at 103,477 to 104,004
10481
mRNA_2114: 10482 - K10768 ALKBH6 alkylated DNA repair protein alkB homolog 6, at 105,978 to 107,393
10482
mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107,556 to 109,708
10483
mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110,471 to 111,882
10484
mRNA_2117: 10485 - Hypothetical Protein, at 112,509 to 114,471
10485
Group
Condition
mRNA
_2113
mRNA
_2114
mRNA
_2115
mRNA
_2116
mRNA
_2117
10481
10482
10483
10484
10485
auxotrophy
YNB Glucose
-0.8
-0.1
+0.1
-0.0
-0.7
growth on oleic acid
YNB Glucose
-1.1
+0.1
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.0
-0.0
-0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.8
+0.0
+0.1
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-0.0
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.0
+0.1
+0.0
+0.1
auxotrophy
Dropout Complete
-0.1
+0.0
+0.0
+0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.0
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
-0.0
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
-0.0
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
+0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
+0.1
+0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.2
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+0.0
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
-0.1
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+1.0
-0.2
-0.0
+0.0
-0.4
growth on ypd
YPD
+0.1
-0.2
+0.4
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.2
+0.0
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
+0.3
-0.0
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
+0.3
-0.0
+0.2
+0.6
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