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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10483 and 10484 are separated by 762 nucleotides
10484 and 10485 are separated by 626 nucleotides
10485 and 10486 are separated by 97 nucleotides
10486 and 10487 are separated by 562 nucleotides
mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107,556 to 109,708
10483
mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110,471 to 111,882
10484
mRNA_2117: 10485 - Hypothetical Protein, at 112,509 to 114,471
10485
mRNA_2118: 10486 - KOG0254 Predicted transporter (major facilitator superfamily), at 114,569 to 117,029
10486
mRNA_2119: 10487 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 117,592 to 119,082
10487
Group
Condition
mRNA
_2115
mRNA
_2116
mRNA
_2117
mRNA
_2118
mRNA
_2119
10483
10484
10485
10486
10487
auxotrophy
YNB Glucose
+0.1
-0.0
-0.7
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
-0.4
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.1
-0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.3
-0.1
+0.0
auxotrophy
Dropout Complete
+0.0
+0.1
-0.5
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
-0.4
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.0
-0.4
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.0
-0.3
+0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
-0.6
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
-0.2
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.2
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
+0.1
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.1
-0.2
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
-0.0
+0.2
+0.2
growth on ypd
YPD
+0.4
+0.0
-0.0
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
+0.3
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.1
+0.2
+0.1
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.2
+0.6
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.1
+0.4
+0.5
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