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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10485 and 10486 are separated by 97 nucleotides
10486 and 10487 are separated by 562 nucleotides
10487 and 10488 are separated by 697 nucleotides
10488 and 10489 are separated by 483 nucleotides
mRNA_2117: 10485 - Hypothetical Protein, at 112,509 to 114,471
10485
mRNA_2118: 10486 - KOG0254 Predicted transporter (major facilitator superfamily), at 114,569 to 117,029
10486
mRNA_2119: 10487 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 117,592 to 119,082
10487
mRNA_2120: 10488 - Hypothetical Protein, at 119,780 to 121,101
10488
mRNA_2121: 10489 - K17991 PXG peroxygenase, at 121,585 to 123,428
10489
Group
Condition
mRNA
_2117
mRNA
_2118
mRNA
_2119
mRNA
_2120
mRNA
_2121
10485
10486
10487
10488
10489
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
+0.1
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.6
+0.1
-0.1
-0.2
auxotrophy
YNB Glucose
-0.7
+0.1
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
+0.1
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
+0.3
-0.1
-0.3
growth on oleic acid
YNB Glucose
-0.2
-0.1
+0.3
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
+0.0
+0.0
+0.1
auxotrophy
Dropout Complete
-0.5
-0.0
+0.2
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.1
+0.3
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.0
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.3
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.0
+0.3
+0.1
-0.2
growth on ypd
YPD
-0.0
-0.1
+0.3
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
+0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
+0.3
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
+0.1
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.1
+0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
+0.5
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.3
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
+0.7
+0.2
-0.1
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