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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10487 and 10488 are separated by 697 nucleotides
10488 and 10489 are separated by 483 nucleotides
10489 and 10490 are separated by 1130 nucleotides
10490 and 10491 are separated by 348 nucleotides
mRNA_2119: 10487 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 117,592 to 119,082
10487
mRNA_2120: 10488 - Hypothetical Protein, at 119,780 to 121,101
10488
mRNA_2121: 10489 - K17991 PXG peroxygenase, at 121,585 to 123,428
10489
mRNA_2122: 10490 - K00103 GULO L-gulonolactone oxidase, at 124,559 to 126,866
10490
mRNA_2123: 10491 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 127,215 to 128,574
10491
Group
Condition
mRNA
_2119
mRNA
_2120
mRNA
_2121
mRNA
_2122
mRNA
_2123
10487
10488
10489
10490
10491
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.2
-0.7
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
-0.3
-0.8
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
-0.4
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.4
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.0
-0.1
-0.6
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
-0.1
-0.4
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
-0.2
+0.2
-0.4
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.3
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
-0.3
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.3
+0.5
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
-0.2
+0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.3
-0.2
+0.2
auxotrophy
Dropout Complete
+0.2
-0.0
+0.2
+0.4
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.0
+0.0
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
+0.2
-0.1
+0.1
auxotrophy
YNB Glucose
+0.1
-0.1
-0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.0
-0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.1
-0.3
-0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.2
-0.1
-0.2
+0.2
growth on ypd
YPD
+0.3
-0.0
-0.1
+0.0
+0.9
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