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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10489 and 10490 are separated by 1130 nucleotides
10490 and 10491 are separated by 348 nucleotides
10491 and 10492 are separated by 60 nucleotides
10492 and 10493 are separated by 391 nucleotides
mRNA_2121: 10489 - K17991 PXG peroxygenase, at 121,585 to 123,428
10489
mRNA_2122: 10490 - K00103 GULO L-gulonolactone oxidase, at 124,559 to 126,866
10490
mRNA_2123: 10491 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 127,215 to 128,574
10491
mRNA_2124: 10492 - Hypothetical Protein, at 128,635 to 129,596
10492
mRNA_2125: 10493 - BLAST BA75_02480T0 [Komagataella pastoris], at 129,988 to 130,716
10493
Group
Condition
mRNA
_2121
mRNA
_2122
mRNA
_2123
mRNA
_2124
mRNA
_2125
10489
10490
10491
10492
10493
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.8
-0.3
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.3
+0.1
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
-0.2
+0.1
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.7
-0.3
-0.1
+0.6
growth on oleic acid
YNB Glucose
-0.3
-0.1
+0.2
+0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
-0.5
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.4
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.6
+0.3
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.3
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.5
+0.1
+0.3
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
+0.4
+0.1
-0.1
auxotrophy
Dropout Complete
+0.2
+0.4
-0.5
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.4
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
+0.2
+0.2
+0.0
auxotrophy
YNB Glucose
-0.1
+0.5
+0.1
+0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.1
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
-0.4
+0.7
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
+0.1
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
+0.2
+0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.2
+0.2
-0.1
+0.7
growth on ypd
YPD
-0.1
+0.0
+0.9
+0.4
+0.1
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