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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10498 and 10499 are separated by 1670 nucleotides
10499 and 10500 are separated by 406 nucleotides
10500 and 10501 are separated by 456 nucleotides
10501 and 10502 are separated by 326 nucleotides
mRNA_2130: 10498 - Hypothetical Protein, at 138,636 to 139,652
10498
mRNA_2131: 10499 - K09580 PDIA1, P4HB protein disulfide-isomerase A1, at 141,323 to 143,619
10499
mRNA_2132: 10500 - Hypothetical Protein, at 144,026 to 145,888
10500
mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146,345 to 148,532
10501
mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148,859 to 150,709
10502
Group
Condition
mRNA
_2130
mRNA
_2131
mRNA
_2132
mRNA
_2133
mRNA
_2134
10498
10499
10500
10501
10502
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-3.6
-0.8
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-2.2
-0.3
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
-0.1
-0.8
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-1.5
+0.0
+0.4
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.2
-0.5
-0.2
growth on ypd
YPD
-0.3
+0.2
-0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+1.5
+0.0
-1.6
+0.3
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.1
+0.7
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.6
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.5
-0.1
-0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.7
-0.3
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.9
-0.5
+0.2
+0.4
auxotrophy
Dropout Complete
+0.5
+0.8
-0.5
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.9
-0.3
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.5
-0.8
+0.4
+0.3
auxotrophy
YNB Glucose
-0.1
+1.2
-0.0
-0.3
+0.5
growth on ricinoleic acid
YNB Glucose
+0.4
+0.8
+0.0
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+1.7
-0.7
+0.6
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+1.6
+0.3
-0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
+1.9
-0.1
+0.6
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+2.1
+0.3
+0.5
-0.4
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