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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10499 and 10500 are separated by 406 nucleotides
10500 and 10501 are separated by 456 nucleotides
10501 and 10502 are separated by 326 nucleotides
10502 and 10503 are separated by 131 nucleotides
mRNA_2131: 10499 - K09580 PDIA1, P4HB protein disulfide-isomerase A1, at 141,323 to 143,619
10499
mRNA_2132: 10500 - Hypothetical Protein, at 144,026 to 145,888
10500
mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146,345 to 148,532
10501
mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148,859 to 150,709
10502
mRNA_2135: 10503 - KOG2922 Uncharacterized conserved protein, at 150,841 to 152,742
10503
Group
Condition
mRNA
_2131
mRNA
_2132
mRNA
_2133
mRNA
_2134
mRNA
_2135
10499
10500
10501
10502
10503
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.6
-0.8
-0.2
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-2.2
-0.3
+0.3
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
-0.8
-0.6
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
-0.5
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.5
+0.0
+0.4
+0.6
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.6
-0.2
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.7
-0.3
-0.4
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.1
-0.6
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.3
-0.1
+0.7
-0.7
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.5
+0.0
-1.6
+0.3
+0.2
auxotrophy
Dropout Complete
+0.8
-0.5
-0.1
+0.2
+0.1
growth on ypd
YPD
+0.2
-0.1
+0.2
+0.0
+0.3
growth on oleic acid
YNB Oleic Acid
+0.9
-0.3
+0.5
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.8
+0.4
+0.3
+0.4
growth on ricinoleic acid
YNB Glucose
+0.8
+0.0
+0.4
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
-0.5
+0.2
+0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+1.6
+0.3
-0.0
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.7
-0.7
+0.6
+0.1
+0.1
auxotrophy
YNB Glucose
+1.2
-0.0
-0.3
+0.5
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.9
-0.1
+0.6
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+2.1
+0.3
+0.5
-0.4
+0.1
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