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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10501 and 10502 are separated by 326 nucleotides
10502 and 10503 are separated by 131 nucleotides
10503 and 10504 are separated by 287 nucleotides
10504 and 10505 are separated by 656 nucleotides
mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146,345 to 148,532
10501
mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148,859 to 150,709
10502
mRNA_2135: 10503 - KOG2922 Uncharacterized conserved protein, at 150,841 to 152,742
10503
mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153,030 to 154,707
10504
mRNA_2137: 10505 - Hypothetical Protein, at 155,364 to 157,707
10505
Group
Condition
mRNA
_2133
mRNA
_2134
mRNA
_2135
mRNA
_2136
mRNA
_2137
10501
10502
10503
10504
10505
ypd buoyancy
40 hrs High Buoyancy
-0.8
-0.6
+0.0
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
+0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.6
+0.3
+0.2
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.1
+0.3
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.2
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.4
-0.1
+0.5
growth on ypd
YPD
+0.2
+0.0
+0.3
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.4
+0.1
-0.0
+0.2
auxotrophy
Dropout Complete
-0.1
+0.2
+0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
-0.3
+0.1
-0.5
+0.3
growth on oleic acid
YNB Glucose
+0.7
-0.7
+0.2
-0.0
-0.1
auxotrophy
YNB Glucose
-0.3
+0.5
+0.4
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.4
+0.1
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.1
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
-0.0
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
+0.4
+0.0
-0.5
growth on oleic acid
YNB Oleic Acid
+0.5
-0.4
+0.2
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
+0.1
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.4
+0.2
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.4
+0.4
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.6
+0.3
-0.1
+0.7
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