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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10502 and 10503 are separated by 131 nucleotides
10503 and 10504 are separated by 287 nucleotides
10504 and 10505 are separated by 656 nucleotides
10505 and 10506 are separated by 127 nucleotides
mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148,859 to 150,709
10502
mRNA_2135: 10503 - KOG2922 Uncharacterized conserved protein, at 150,841 to 152,742
10503
mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153,030 to 154,707
10504
mRNA_2137: 10505 - Hypothetical Protein, at 155,364 to 157,707
10505
mRNA_2138: 10506 - HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281, at 157,835 to 161,101
10506
Group
Condition
mRNA
_2134
mRNA
_2135
mRNA
_2136
mRNA
_2137
mRNA
_2138
10502
10503
10504
10505
10506
growth on oleic acid
YNB Glucose
-0.7
+0.2
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.3
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.0
+0.1
-0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.4
-0.1
+0.5
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
-0.5
+0.3
+0.0
growth on ypd
YPD
+0.0
+0.3
-0.2
-0.4
-0.0
auxotrophy
Dropout Complete
+0.2
+0.1
-0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
-0.1
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
+0.1
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
-0.2
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
-0.0
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
+0.2
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
-0.0
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.4
+0.0
-0.5
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.2
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.0
+0.1
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.4
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose
+0.5
+0.4
-0.3
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
+0.0
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.3
-0.1
+0.7
-0.3
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