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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10506 and 10507 are separated by 275 nucleotides
10507 and 10508 are separated by 441 nucleotides
10508 and 10509 are separated by 931 nucleotides
10509 and 10510 are separated by 1519 nucleotides
mRNA_2138: 10506 - HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281, at 157,835 to 161,101
10506
mRNA_2139: 10507 - K09377 CSRP cysteine and glycine-rich protein, at 161,377 to 162,483
10507
mRNA_2140: 10508 - HMMPfam-F-box domain-PF00646,HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF48350,SUPERFAMILY--SSF81383, at 162,925 to 174,925
10508
mRNA_2141: 10509 - SUPERFAMILY--SSF52047, at 175,857 to 177,524
10509
mRNA_2142: 10510 - Hypothetical Protein, at 179,044 to 180,564
10510
Group
Condition
mRNA
_2138
mRNA
_2139
mRNA
_2140
mRNA
_2141
mRNA
_2142
10506
10507
10508
10509
10510
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.1
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
+0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
-0.0
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.4
-0.1
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
-0.2
-0.1
-0.2
auxotrophy
Dropout Complete
-0.3
-0.6
-0.0
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.5
-0.1
+0.0
-0.3
growth on ricinoleic acid
YNB Glucose
+0.0
-0.6
-0.1
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
-0.1
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.3
-0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.0
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.2
+0.0
-0.0
+0.2
auxotrophy
YNB Glucose
-0.0
-0.5
-0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
+0.1
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
-0.0
+0.4
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
-0.0
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.1
+0.8
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.4
+0.1
-0.0
+0.1
growth on ypd
YPD
-0.0
+0.1
+0.1
+0.7
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.7
-0.0
+0.3
+0.3
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