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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10508 and 10509 are separated by 931 nucleotides
10509 and 10510 are separated by 1519 nucleotides
10510 and 10511 are separated by 347 nucleotides
10511 and 10512 are separated by 289 nucleotides
mRNA_2140: 10508 - HMMPfam-F-box domain-PF00646,HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF48350,SUPERFAMILY--SSF81383, at 162,925 to 174,925
10508
mRNA_2141: 10509 - SUPERFAMILY--SSF52047, at 175,857 to 177,524
10509
mRNA_2142: 10510 - Hypothetical Protein, at 179,044 to 180,564
10510
mRNA_2143: 10511 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 180,912 to 181,824
10511
mRNA_2144: 10512 - Hypothetical Protein, at 182,114 to 183,256
10512
Group
Condition
mRNA
_2140
mRNA
_2141
mRNA
_2142
mRNA
_2143
mRNA
_2144
10508
10509
10510
10511
10512
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
-0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.2
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.2
+0.1
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.3
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.1
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.3
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-0.4
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
-0.1
+0.0
+0.1
auxotrophy
Dropout Complete
-0.0
+0.2
+0.1
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
-0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-0.2
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.1
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.0
+0.2
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
-0.2
+0.1
-0.1
auxotrophy
YNB Glucose
-0.0
+0.3
+0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.4
-0.4
+0.2
+0.4
growth on ypd
YPD
+0.1
+0.7
+0.2
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.3
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.8
-0.2
+0.3
+0.2
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