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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10510 and 10511 are separated by 347 nucleotides
10511 and 10512 are separated by 289 nucleotides
10512 and 10513 are separated by 476 nucleotides
10513 and 10514 are separated by 248 nucleotides
mRNA_2142: 10510 - Hypothetical Protein, at 179,044 to 180,564
10510
mRNA_2143: 10511 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 180,912 to 181,824
10511
mRNA_2144: 10512 - Hypothetical Protein, at 182,114 to 183,256
10512
mRNA_2145: 10513 - HMMPfam-Protein of unknown function DUF89-PF01937,SUPERFAMILY--SSF111321, at 183,733 to 185,513
10513
mRNA_2146: 10514 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 185,762 to 187,254
10514
Group
Condition
mRNA
_2142
mRNA
_2143
mRNA
_2144
mRNA
_2145
mRNA
_2146
10510
10511
10512
10513
10514
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.0
-0.1
-0.1
-1.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
+0.0
+0.0
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
-0.1
+0.1
-0.7
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
-0.2
+0.3
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
-0.2
+0.4
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.2
+0.4
+0.1
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.2
-0.0
-0.3
growth on oleic acid
YNB Glucose
-0.3
+0.0
+0.1
+0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.1
+0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
-0.1
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
+0.1
+0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.1
-0.0
-0.2
auxotrophy
YNB Glucose
+0.1
-0.0
+0.0
+0.4
-0.7
auxotrophy
Dropout Complete
+0.1
-0.2
-0.2
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.3
+0.2
+0.2
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
+0.2
+0.3
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
+0.0
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
+0.1
+0.3
-0.5
growth on ypd
YPD
+0.2
-0.3
+0.2
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.3
+0.4
+0.1
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