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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10512 and 10513 are separated by 476 nucleotides
10513 and 10514 are separated by 248 nucleotides
10514 and 10515 are separated by 98 nucleotides
10515 and 10516 are separated by 120 nucleotides
mRNA_2144: 10512 - Hypothetical Protein, at 182,114 to 183,256
10512
mRNA_2145: 10513 - HMMPfam-Protein of unknown function DUF89-PF01937,SUPERFAMILY--SSF111321, at 183,733 to 185,513
10513
mRNA_2146: 10514 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 185,762 to 187,254
10514
mRNA_2147: 10515 - K01719 hemD, UROS uroporphyrinogen-III synthase, at 187,353 to 188,300
10515
mRNA_2148: 10516 - KOG2490 Predicted membrane protein, at 188,421 to 191,027
10516
Group
Condition
mRNA
_2144
mRNA
_2145
mRNA
_2146
mRNA
_2147
mRNA
_2148
10512
10513
10514
10515
10516
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-1.7
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
-0.3
N.D.
-1.1
auxotrophy
YNB Glucose
+0.0
+0.4
-0.7
N.D.
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.2
N.D.
-0.9
auxotrophy
Dropout Complete
-0.2
+0.3
-0.2
N.D.
-0.9
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.3
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.8
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-0.2
N.D.
-0.6
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
-0.6
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
-0.5
N.D.
-0.5
growth on ypd
YPD
+0.2
+0.0
+0.1
N.D.
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
-1.1
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.1
+0.3
-0.6
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.0
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.0
-0.8
N.D.
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.4
-0.7
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-0.7
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
-0.9
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.7
N.D.
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
-0.4
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
+0.3
+0.4
+0.1
N.D.
-0.1
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