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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10519 and 10520 are separated by 113 nucleotides
10520 and 10521 are separated by 120 nucleotides
10521 and 10522 are separated by 234 nucleotides
10522 and 10523 are separated by 359 nucleotides
mRNA_2151: 10519 - K03348 APC1 anaphase-promoting complex subunit 1, at 192,914 to 199,163
10519
mRNA_2152: 10520 - KOG2887 Membrane protein involved in ER to Golgi transport, at 199,277 to 200,467
10520
mRNA_2153: 10521 - K14003 PREB, SEC12 prolactin regulatory element-binding protein, at 200,588 to 202,509
10521
mRNA_2154: 10522 - KOG2689 Predicted ubiquitin regulatory protein, at 202,744 to 204,130
10522
mRNA_2155: 10523 - Hypothetical Protein, at 204,490 to 205,403
10523
Group
Condition
mRNA
_2151
mRNA
_2152
mRNA
_2153
mRNA
_2154
mRNA
_2155
10519
10520
10521
10522
10523
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-1.1
N.D.
-0.4
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
-1.0
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
N.D.
+0.1
-0.4
growth on ypd
YPD
-0.6
+0.3
N.D.
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.2
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
+0.0
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.2
N.D.
-0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.2
N.D.
+0.1
-0.0
auxotrophy
Dropout Complete
+0.2
-0.0
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.4
N.D.
+0.3
-0.1
auxotrophy
YNB Glucose
+0.1
+0.0
N.D.
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.7
+0.0
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
N.D.
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
N.D.
+0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.4
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.4
N.D.
+0.2
+0.4
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