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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10524 and 10525 are separated by 443 nucleotides
10525 and 10526 are separated by 374 nucleotides
10526 and 10527 are separated by 357 nucleotides
10527 and 10528 are separated by 1677 nucleotides
mRNA_2156: 10524 - Hypothetical Protein, at 205,940 to 207,081
10524
mRNA_2157: 10525 - Hypothetical Protein, at 207,525 to 208,737
10525
mRNA_2158: 10526 - K14550 UTP10, HEATR1 U3 small nucleolar RNA-associated protein 10, at 209,112 to 215,821
10526
mRNA_2159: 10527 - K03263 EIF5A translation initiation factor 5A, at 216,179 to 217,701
10527
mRNA_2160: 10528 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 219,379 to 220,731
10528
Group
Condition
mRNA
_2156
mRNA
_2157
mRNA
_2158
mRNA
_2159
mRNA
_2160
10524
10525
10526
10527
10528
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
N.D.
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
N.D.
N.D.
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
N.D.
N.D.
+0.1
growth on ypd
YPD
+0.1
-0.2
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.5
N.D.
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.6
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.5
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
N.D.
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.3
+0.1
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.2
N.D.
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.2
N.D.
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.0
N.D.
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
N.D.
N.D.
+0.1
auxotrophy
Dropout Complete
+0.5
-0.1
N.D.
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.4
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose
+0.6
+0.4
N.D.
N.D.
+0.2
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