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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10526 and 10527 are separated by 357 nucleotides
10527 and 10528 are separated by 1677 nucleotides
10528 and 10529 are separated by 233 nucleotides
10529 and 10530 are separated by 339 nucleotides
mRNA_2158: 10526 - K14550 UTP10, HEATR1 U3 small nucleolar RNA-associated protein 10, at 209,112 to 215,821
10526
mRNA_2159: 10527 - K03263 EIF5A translation initiation factor 5A, at 216,179 to 217,701
10527
mRNA_2160: 10528 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 219,379 to 220,731
10528
mRNA_2161: 10529 - K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family, at 220,965 to 223,272
10529
mRNA_2162: 10530 - K15027 EIF2D translation initiation factor 2D, at 223,612 to 225,989
10530
Group
Condition
mRNA
_2158
mRNA
_2159
mRNA
_2160
mRNA
_2161
mRNA
_2162
10526
10527
10528
10529
10530
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.7
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.2
+0.1
-0.7
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
+0.1
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.2
+0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
+0.1
-0.5
auxotrophy
Dropout Complete
N.D.
N.D.
+0.4
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.2
+0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.6
-0.1
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.6
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
+0.3
-0.3
growth on ypd
YPD
N.D.
N.D.
+0.1
+0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.4
+0.4
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
+0.3
+0.5
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