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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10528 and 10529 are separated by 233 nucleotides
10529 and 10530 are separated by 339 nucleotides
10530 and 10531 are separated by 233 nucleotides
10531 and 10532 are separated by 200 nucleotides
mRNA_2160: 10528 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 219,379 to 220,731
10528
mRNA_2161: 10529 - K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family, at 220,965 to 223,272
10529
mRNA_2162: 10530 - K15027 EIF2D translation initiation factor 2D, at 223,612 to 225,989
10530
mRNA_2163: 10531 - K18468 VPS35 vacuolar protein sorting-associated protein 35, at 226,223 to 229,992
10531
mRNA_2164: 10532 - K10736 MCM10 minichromosome maintenance protein 10, at 230,193 to 233,259
10532
Group
Condition
mRNA
_2160
mRNA
_2161
mRNA
_2162
mRNA
_2163
mRNA
_2164
10528
10529
10530
10531
10532
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.3
-0.1
N.D.
-1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
-0.5
N.D.
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
-0.3
N.D.
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
-0.2
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.7
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.3
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.2
+0.2
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.4
-0.1
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.4
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
+0.0
N.D.
-0.2
auxotrophy
Dropout Complete
+0.4
-0.1
-0.3
N.D.
-0.3
growth on ypd
YPD
+0.1
+0.5
-0.3
N.D.
-0.5
auxotrophy
YNB Glucose
+0.2
+0.3
-0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+0.6
+0.0
-0.4
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.1
+0.8
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
+0.5
N.D.
-0.5
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.5
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.4
+0.5
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.2
N.D.
+0.6
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