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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10529 and 10530 are separated by 339 nucleotides
10530 and 10531 are separated by 233 nucleotides
10531 and 10532 are separated by 200 nucleotides
10532 and 10533 are separated by 169 nucleotides
mRNA_2161: 10529 - K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family, at 220,965 to 223,272
10529
mRNA_2162: 10530 - K15027 EIF2D translation initiation factor 2D, at 223,612 to 225,989
10530
mRNA_2163: 10531 - K18468 VPS35 vacuolar protein sorting-associated protein 35, at 226,223 to 229,992
10531
mRNA_2164: 10532 - K10736 MCM10 minichromosome maintenance protein 10, at 230,193 to 233,259
10532
mRNA_2165: 10533 - Hypothetical Protein, at 233,429 to 233,973
10533
Group
Condition
mRNA
_2161
mRNA
_2162
mRNA
_2163
mRNA
_2164
mRNA
_2165
10529
10530
10531
10532
10533
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.5
N.D.
-1.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
N.D.
-0.6
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
N.D.
-0.7
-0.2
growth on oleic acid
YNB Oleic Acid
+0.0
-0.4
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.7
N.D.
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
N.D.
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
-1.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.4
N.D.
-0.2
+0.0
auxotrophy
Dropout Complete
-0.1
-0.3
N.D.
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.1
N.D.
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
N.D.
-0.6
-0.1
growth on ypd
YPD
+0.5
-0.3
N.D.
-0.5
+0.2
auxotrophy
YNB Glucose
+0.3
-0.3
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
N.D.
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.1
-0.5
N.D.
+0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.5
N.D.
-0.5
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.2
N.D.
+0.6
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.8
N.D.
-0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.5
N.D.
-0.3
+0.5
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