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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10532 and 10533 are separated by 169 nucleotides
10533 and 10534 are separated by 726 nucleotides
10534 and 10535 are separated by 217 nucleotides
10535 and 10536 are separated by 54 nucleotides
mRNA_2164: 10532 - K10736 MCM10 minichromosome maintenance protein 10, at 230,193 to 233,259
10532
mRNA_2165: 10533 - Hypothetical Protein, at 233,429 to 233,973
10533
mRNA_2166: 10534 - Hypothetical Protein, at 234,700 to 236,014
10534
mRNA_2167: 10535 - K03143 TFIIH3, GTF2H3, TFB4 transcription initiation factor TFIIH subunit 3, at 236,232 to 237,790
10535
mRNA_2168: 10536 - Hypothetical Protein, at 237,845 to 238,808
10536
Group
Condition
mRNA
_2164
mRNA
_2165
mRNA
_2166
mRNA
_2167
mRNA
_2168
10532
10533
10534
10535
10536
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.2
-0.5
-0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.7
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.2
-0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.2
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.1
-0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.2
+0.0
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
-0.0
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
-0.2
N.D.
+0.0
growth on ypd
YPD
-0.5
+0.2
+0.0
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
+0.0
N.D.
+0.1
auxotrophy
YNB Glucose
-0.3
+0.1
-0.0
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.0
+0.0
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.4
-0.2
N.D.
+0.2
auxotrophy
Dropout Complete
-0.3
+0.3
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
+0.1
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.5
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.0
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.5
+0.2
-0.0
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.3
-0.2
N.D.
+0.2
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