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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10537 and 10538 are separated by 84 nucleotides
10538 and 10539 are separated by 419 nucleotides
10539 and 10540 are separated by 385 nucleotides
10540 and 10541 are separated by 524 nucleotides
mRNA_2169: 10537 - Hypothetical Protein, at 239,219 to 240,668
10537
mRNA_2170: 10538 - K20294 COG7 conserved oligomeric Golgi complex subunit 7, at 240,753 to 243,794
10538
mRNA_2171: 10539 - K06877 K06877 DEAD/DEAH box helicase domain-containing protein, at 244,214 to 249,218
10539
mRNA_2172: 10540 - K00968 PCYT1 choline-phosphate cytidylyltransferase, at 249,604 to 252,159
10540
mRNA_2173: 10541 - K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6, at 252,684 to 253,574
10541
Group
Condition
mRNA
_2169
mRNA
_2170
mRNA
_2171
mRNA
_2172
mRNA
_2173
10537
10538
10539
10540
10541
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.2
+0.2
-2.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
+0.1
+0.3
-1.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.6
+0.1
+0.3
-2.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.1
+0.3
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.5
-0.1
+0.3
-1.5
auxotrophy
Dropout Complete
-0.2
+0.4
-0.2
+0.4
-1.3
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
-0.1
+0.4
-1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
-0.2
+0.3
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.1
+0.1
+0.1
-1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.5
-0.1
+0.4
-1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
-0.2
+0.4
-0.4
growth on ypd
YPD
+0.1
+0.1
-0.1
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.7
-0.0
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.8
-0.0
+0.6
-1.2
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.2
+0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.1
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.4
-0.1
+0.5
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.3
+0.1
+0.8
-0.5
auxotrophy
YNB Glucose
+0.1
+0.5
-0.2
+0.7
-0.7
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
-0.3
+0.4
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
-0.0
+1.0
+1.1
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