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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10541 and 10542 are separated by 452 nucleotides
10542 and 10543 are separated by 293 nucleotides
10543 and 10544 are separated by 924 nucleotides
10544 and 10545 are separated by 1151 nucleotides
mRNA_2173: 10541 - K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6, at 252,684 to 253,574
10541
mRNA_2174: 10542 - K14009 BCAP31, BAP31 B-cell receptor-associated protein 31, at 254,027 to 255,180
10542
mRNA_2175: 10543 - HMMPfam-Mus7/MMS22 family-PF09462, at 255,474 to 261,372
10543
mRNA_2176: 10544 - Hypothetical Protein, at 262,297 to 263,218
10544
mRNA_2177: 10545 - Hypothetical Protein, at 264,370 to 265,030
10545
Group
Condition
mRNA
_2173
mRNA
_2174
mRNA
_2175
mRNA
_2176
mRNA
_2177
10541
10542
10543
10544
10545
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.1
-2.0
-0.4
-1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.4
-0.3
-0.7
-0.9
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.9
+0.0
-1.1
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.4
-0.3
-0.6
-1.0
-0.1
growth on ricinoleic acid
YNB Glucose
-1.4
-0.1
-0.4
-0.8
-0.3
auxotrophy
Dropout Complete
-1.3
+0.1
-1.0
-0.5
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
-0.0
-1.1
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.5
+0.1
+0.1
-0.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-2.0
+0.3
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose
-0.7
+0.1
+0.1
-0.6
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.3
+0.7
-1.7
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.1
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
-0.2
-0.2
+0.1
growth on ypd
YPD
+0.0
+0.0
-0.6
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.0
+0.0
+0.4
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.2
+0.3
+0.5
-0.6
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-1.1
+0.2
+0.6
-0.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.8
-0.4
-0.0
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
-0.5
+0.6
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
-0.1
-0.4
+0.6
ypd buoyancy
40 hrs High Buoyancy
+1.1
-0.0
+0.3
+0.4
-0.4
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